A theoretical physicist by training, my research is centered around intelligent machines. I do both theoretical and experimental work. The theoretical work is focussed on analyzing distributed/networked algorithms in the context of control theory and machine learning, using tools from statistical physics. My lab is involved in brain-wide mesoscale circuit mapping in the Mouse as well as in the Marmoset. An organizing idea behind my research is that there may be common underlying mathematical principles that constrain evolved biological systems and human-engineered systems.
Partha Mitra is interested in understanding intelligent machines that are products of biological evolution (particularly animal brains), with the basic hypothesis that common underlying principles may govern these “wet” intelligent machines and the “dry” intelligent machines that are transforming the present economy. Dr Mitra initiated the idea of brain-wide mesoscale circuit mapping, and his laboratory is involved in carrying out such mapping in the Mouse (http://mouse.brainarchitecture.org) and the Marmoset (in collaboration with Japanese and Australian scientists at the RIKEN Brain Science Institute and Monash University).
Dr Mitra spent ten years as a member of the theory department at Bell Laboratories and holds a visiting professorship at IIT Madras where he is helping establish the Center for Computational Brain Research. He has an active theoretical research program in machine learning and control theory, wheren he is using tools from statistical physics to analyze the performance of distributed/networked algorithms in the “thermodynamic” limit of many variables.
- Fellow, American Physical Society
- Senior Member, IEEE
- H N Mahabala Chair Professor (visiting), IIT Madras
- Partha Mitra awarded NSF ‘Early Concept’ grant for neuroscience
- CSHL’s Partha Mitra receives two awards for theoretical work with implications for brain circuitry
- Senior Visiting Scientist, RIKEN Brain Science Institute
- Mitra awarded “Transformative” NIH Grant
- George S. Axelby Outstanding Paper Award
Building on 150 years of neuroanatomy
October 7, 2021
Learn more about how researchers reached a milestone in a years-long effort to catalog the cells of the human, mouse, and monkey brains.
Think a census of humans is hard? Try counting their brain cells!
October 6, 2021
CSHL researchers and other collaborators reached a milestone in a years-long effort to catalog the cells of the human, mouse, and monkey brains.
Research matters
June 8, 2021
Innovative research and educational activities never stopped during the COVID-19 pandemic.
Let’s talk about the elephant in the data
June 3, 2021
How much prior knowledge does a machine learning computer need to find the truth? CSHL Professor Partha Mitra looks to human brains for an answer.
NIH BRAIN Initiative invests $9.7 million in CSHL scientists
December 29, 2020
CSHL scientists received grants to broaden our knowledge of the human brain and how to treat neurological disorders.
Partha Mitra: AI and brain circuits
November 30, 2020
Mitra answers audience questions about how understanding brain connections can bring medical and technological breakthroughs.
LIVE at the Lab with Partha Mitra: AI and brain circuits
November 27, 2020
CSHL Professor Partha Mitra presents some challenges for neuroscientists and how artificial intelligence (AI) helps overcome them.
AI learns to trace neuronal pathways
September 28, 2020
A picture of the brain’s rich interconnections is emerging with the help of ever more accurate computer-aided approaches.
Who COVID-19 hit hardest in New York
July 10, 2020
Report on nearly 50,000 New Yorkers tested for COVID-19 reveals demographics, hospitalization rates for positive patients.
New brain research could change how concussions are treated
October 13, 2019
Blood vessel damage seems to be more widespread than nerve damage in patients with traumatic brain injuries.
Selected Publications
Fitting elephants in modern machine learning by statistically consistent interpolation
1 May 2021 | Nature Machine Intelligence | 3(5):378-386
Mitra, P
A multimodal cell census and atlas of the mammalian primary motor cortex
21 Oct 2020 | BioRxiv
BRAIN Initiative Cell Census Network (BICCN), Adkins, Ricky, Aldridge, Andrew, Allen, Shona, Ament, Seth, An, Xu, Armand, Ethan, Ascoli, Giorgio, Bakken, Trygve, Bandrowski, Anita, Banerjee, Samik, Barkas, Nikolaos, Bartlett, Anna, Bateup, Helen, Behrens, Margarita, Berens, Philipp, Berg, Jim, Bernabucci, Matteo, Bernaerts, Yves, Bertagnolli, Darren, Biancalani, Tommaso, Boggeman, Lara, Booeshaghi, Sina, Bowman, Ian, Bravo, Héctor, Cadwell, Cathryn, Callaway, Edward, Carlin, Benjamin, O'Connor, Carolyn, Carter, Robert, Casper, Tamara, Castanon, Rosa, Castro, Jesus, Chance, Rebecca, Chatterjee, Apaala, Chen, Huaming, Chun, Jerold, Colantuoni, Carlo, Crabtree, Jonathan, Creasy, Heather, Crichton, Kirsten, Crow, Megan, D'Orazi, Florence, Daigle, Tanya, Dalley, Rachel, Dee, Nick, Degatano, Kylee, Dichter, Benjamin, Diep, Dinh, Ding, Liya, Ding, Song-Lin, Dominguez, Bertha, Dong, Hong-Wei, Dong, Weixiu, Dougherty, Elizabeth, Dudoit, Sandrine, Ecker, Joseph, Eichhorn, Stephen, Fang, Rongxin, Felix, Victor, Feng, Guoping, Feng, Zhao, Fischer, Stephan, Fitzpatrick, Conor, Fong, Olivia, Foster, Nicholas, Galbavy, William, Gee, James, Ghosh, Satrajit, Giglio, Michelle, Gillespie, Thomas, Gillis, Jesse, Goldman, Melissa, Goldy, Jeff, Gong, Hui, Gou, Lin, Grauer, Michael, Halchenko, Yaroslav, Harris, Julie, Hartmanis, Leonard, Hatfield, Joshua, Hawrylycz, Mike, Helba, Brian, Herb, Brian, Hertzano, Ronna, Hintiryan, Houri, Hirokawa, Karla, Hockemeyer, Dirk, Hodge, Rebecca, Hood, Greg, Horwitz, Gregory, Hou, Xiaomeng, Hu, Lijuan, Hu, Qiwen, Huang, Josh, Huo, Bingxing, Ito-Cole, Tony, Jacobs, Matthew, Jia, Xueyan, Jiang, Shengdian, Jiang, Tao, Jiang, Xiaolong, Jin, Xin, Jorstad, Nikolas, Kalmbach, Brian, Kancherla, Jayaram, Keene, Dirk, Kelly, Kathleen, Khajouei, Farzaneh, Kharchenko, Peter, Kim, Gukhan, Ko, Andrew, Kobak, Dmitry, Konwar, Kishori, Kramer, Daniel, Krienen, Fenna, Kroll, Matthew, Kuang, Xiuli, Kuo, Hsien-Chi, Lake, Blue, Larsen, Rachael, Lathia, Kanan, Laturnus, Sophie, Lee, Angus, Lee, Cheng-Ta, Lee, Kuo-Fen, Lein, Ed, Lesnar, Phil, Li, Anan, Li, Xiangning, Li, Xu, Li, Yang, Li, Yaoyao, Li, Yuanyuan, Lim, Byungkook, Linnarsson, Sten, Liu, Christine, Liu, Hanqing, Liu, Lijuan, Lucero, Jacinta, Luo, Chongyuan, Luo, Qingming, Macosko, Evan, Mahurkar, Anup, Martone, Maryann, Matho, Katherine, McCarroll, Steven, McCracken, Carrie, McMillen, Delissa, Miranda, Elanine, Mitra, Partha, Miyazaki, Paula, Mizrachi, Judith, Mok, Stephanie, Mukamel, Eran, Mulherkar, Shalaka, Nadaf, Naeem, Naeemi, Maitham, Narasimhan, Arun, Nery, Joseph, Ng, Lydia, Ngai, John, Nguyen, Thuc, Nickel, Lance, Nicovich, Philip, Niu, Sheng-Yong, Ntranos, Vasilis, Nunn, Michael, Olley, Dustin, Orvis, Joshua, Osteen, Julia, Osten, Pavel, Owen, Scott, Pachter, Lior, Palaniswamy, Ramesh, Palmer, Carter, Pang, Yan, Peng, Hanchuan, Pham, Thanh, Pinto-Duarte, Antonio, Plongthongkum, Nongluk, Poirion, Olivier, Preissl, Sebastian, Purdom, Elizabeth, Qu, Lei, Rashid, Mohammad, Reed, Nora, Regev, Aviv, Ren, Bing, Ren, Miao, Rimorin, Christine, Risso, Davide, Rivkin, Angeline, Muñoz-Castañeda, Rodrigo, Romanow, William, Ropelewski, Alexander, Roux de Bézieux, Hector, Ruan, Zongcai, Sandberg, Rickard, Savoia, Steven, Scala, Federico, Schor, Michael, Shen, Elise, Siletti, Kimberly, Smith, Jared, Smith, Kimberly, Somasundaram, Saroja, Song, Yuanyuan, Sorensen, Staci, Stafford, David, Street, Kelly, Sulc, Josef, Sunkin, Susan, Svensson, Valentine, Tan, Pengcheng, Tan, Zheng, Tasic, Bosiljka, Thompson, Carol, Tian, Wei, Tickle, Timothy, Tieu, Michael, Ting, Jonathan, Tolias, Andreas, Torkelson, Amy, Tung, Herman, Vaishnav, Eeshit, Van den Berge, Koen, van Velthoven, Cindy, Vanderburg, Charles, Veldman, Matthew, Vu, Minh, Wakeman, Wayne, Wang, Peng, Wang, Quanxin, Wang, Xinxin, Wang, Yimin, Wang, Yun, Welch, Joshua, White, Owen, Williams, Elora, Xie, Fangming, Xie, Peng, Xiong, Feng, Yang, William, Yanny, Anna, Yao, Zizhen, Yin, Lulu, Yu, Yang, Yuan, Jing, Z, Hongkui
Cellular Anatomy of the Mouse Primary Motor Cortex
2 Oct 2020 | BioRxiv
Muñoz-Castañeda, Rodrigo, Zingg, Brian, Matho, Katherine, Wang, Quanxin, Chen, Xiaoyin, Foster, Nicholas, Narasimhan, Arun, Li, Anan, Hirokawa, Karla, Huo, Bingxing, Bannerjee, Samik, Korobkova, Laura, Park, Chris, Park, Young-Gyun, Bienkowski, Michael, Chon, Uree, Wheeler, Diek, Li, Xiangning, Wang, Yun, Kelly, Kathleen, An, Xu, Attili, Sarojini, Bowman, Ian, Bludova, Anastasiia, Cetin, Ali, Ding, Liya, Drewes, Rhonda, D’Orazi, Florence, Elowsky, Corey, Fischer, Stephan, Galbavy, William, Gao, Lei, Gillis, Jesse, Groblewski, Peter, Gou, Lin, Hahn, Joel, Hatfield, Joshua, Hintiryan, Houri, Huang, Jason, Kondo, Hideki, Kuang, Xiuli, Lesnar, Philip, Li, Xu, Li, Yaoyao, Lin, Mengkuan, Liu, Lijuan, Lo, Darrick, Mizrachi, Judith, Mok, Stephanie, Naeemi, Maitham, Nicovich, Philip, Palaniswamy, Ramesh, Palmer, Jason, Qi, Xiaoli, Shen, Elise, Sun, Yu-Chi, Tao, Huizhong, Wakemen, Wayne, Wang, Yimin, Xie, Peng, Yao, Shenqin, Yuan, Jin, Zhu, Muye, Ng, Lydia, Zhang, Li, Lim, Byung, Hawrylycz, Michael, Gong, Hui, Gee, James, Kim, Yongsoo, Peng, Hanchuan, Chuang, Kwanghun, Yang, William, Luo, Qingming, Mitra, Partha, Zador, Anthony, Zeng, Hongkui, Ascoli, Giorgio, Huang, Josh, Osten, Pavel, Harris, Julie, Dong, Hong-Wei
Semantic segmentation of microscopic neuroanatomical data by combining topological priors with encoder-decoder deep networks
Oct 2020 | Nature Machine Intelligence | 2(10):585-+
Banerjee, Samik, Magee, Lucas, Wang, Dingkang, Li, Xu, Huo, Bing-Xing, Jayakumar, Jaikishan, Matho, Katherine, Lin, Meng-Kuan, Ram, Keerthi, Sivaprakasam, Mohanasankar, Huang, Josh, Wang, Yusu, Mitra, Partha
ZEBrA: Zebra finch Expression Brain Atlas-A resource for comparative molecular neuroanatomy and brain evolution studies
Aug 2020 | Journal of Comparative Neurology | 528(12):2099-2131
Lovell, P, Wirthlin, M, Kaser, T, Buckner, A, Carleton, J, Snider, B, McHugh, A, Tolpygo, A, Mitra, P, Mello, C
All Publications
Cortical glutamatergic projection neuron types contribute to distinct functional subnetworks
23 Jan 2023 | Nature Neuroscience
Mohan, Hemanth, An, Xu, Xu, X, Kondo, Hideki, Zhao, Shengli, Matho, Katherine, Wang, Bor-Shuen, Musall, Simon, Mitra, Partha, Huang, Z
The BRAIN Initiative Cell Census Network Data Ecosystem: A User’s Guide
2022 | bioRxiv
BICCN Data Ecosystem Collaboration, Hawrylycz, Michael, Martone, Maryann, Hof, Patrick, Lein, Ed, Regev, Aviv, Ascoli, Giorgio, Bjaalie, Jan, Dong, Hong-Wei, Ghosh, Satrajit, Gillis, Jesse, Hertzano, Ronna, Haynor, David, Kim, Yongsoo, Liu, Yufeng, Miller, Jeremy, Mitra, Partha, Mukamel, Eran, Osumi-Sutherland, David, Peng, Hanchuan, Ray, Patrick, Sanchez, Raymond, Ropelewski, Alex, Scheuermann, Richard, Tan, Shawn, Tickle, Timothy, Tilgner, Hagen, Varghese, Merina, Wester, Brock, White, Owen, Aevermann, Brian, Allemang, David, Ament, Seth, Athey, Thomas, Baker, Pamela, Baker, Cody, Baker, Katherine, Bandrowski, Anita, Bishwakarma, Prajal, Carr, Ambrose, Chen, Min, Choudhury, Roni, Cool, Jonah, Creasy, Heather, D'Orazi, Florence, Degatano, Kylee, Dichter, Benjamin, Ding, Song-Lin, Dolbeare, Tim, Ecker, Joseph, Fang, Rongxin, Fillion-Robin, Jean-Christophe, Fliss, Timothy, Gee, James, Gillespie, Tom, Gouwens, Nathan, Halchenko, Yaroslav, Harris, Nomi, Herb, Brian, Hintiryan, Houri, Hood, Gregory, Horvath, Sam, Jarecka, Dorota, Jiang, Shengdian, Khajouei, Farzaneh, Kiernan, Elizabeth, Kir, Huseyin, Kruse, Lauren, Lee, Changkyu, Lelieveldt, Boudewijn, Li, Yang, Liu, Hanqing, Markuhar, Anup, Mathews, James, Mathews, Kaylee, Miller, Michael, Mollenkopf, Tyler, Mufti, Shoaib, Mungall, Christopher, Ng, Lydia, Orvis, Joshua, Puchades, Maja, Qu, Lei, Receveur, Joseph, Ren, Bing, Sjoquist, Nathan, Staats, Brian, Thompson, Carol, Tward, Daniel, van Velthoven, Cindy, Wang, Quanxin, Xie, Fangming, Xu, Hua, Yao, Zizhen, Yun, Zhixi, Zeng, Hongkui, Zhang, Guo-Qiang, Zhang, Yun, Zheng, Jim, Zingg, Brian
Sizing up whole-brain neuronal tracing
24 Jan 2022 | Science Bulletin
Ascoli, G, Huo, B, Mitra, P
Cortical glutamatergic projection neuron types contribute to distinct functional subnetworks
30 Dec 2021 | bioRxiv
Mohan, Hemanth, An, Xu, Kondo, Hideki, Zhao, Shengli, Matho, Katherine, Musall, Simon, Mitra, Partha, Huang, Josh
Cellular anatomy of the mouse primary motor cortex.
Oct 2021 | Nature | 598(7879):159-166
Muñoz-Castañeda, Rodrigo, Zingg, Brian, Matho, Katherine, Chen, Xiaoyin, Wang, Quanxin, Foster, Nicholas, Li, Anan, Narasimhan, Arun, Hirokawa, Karla, Huo, Bingxing, Bannerjee, Samik, Korobkova, Laura, Park, Chris, Park, Young-Gyun, Bienkowski, Michael, Chon, Uree, Wheeler, Diek, Li, Xiangning, Wang, Yun, Naeemi, Maitham, Xie, Peng, Liu, Lijuan, Kelly, Kathleen, An, Xu, Attili, Sarojini, Bowman, Ian, Bludova, Anastasiia, Cetin, Ali, Ding, Liya, Drewes, Rhonda, D'Orazi, Florence, Elowsky, Corey, Fischer, Stephan, Galbavy, William, Gao, Lei, Gillis, Jesse, Groblewski, Peter, Gou, Lin, Hahn, Joel, Hatfield, Joshua, Hintiryan, Houri, Huang, Junxiang, Kondo, Hideki, Kuang, Xiuli, Lesnar, Philip, Li, Xu, Li, Yaoyao, Lin, Mengkuan, Lo, Darrick, Mizrachi, Judith, Mok, Stephanie, Nicovich, Philip, Palaniswamy, Ramesh, Palmer, Jason, Qi, Xiaoli, Shen, Elise, Sun, Yu-Chi, Tao, Huizhong, Wakemen, Wayne, Wang, Yimin, Yao, Shenqin, Yuan, Jing, Zhan, Huiqing, Zhu, Muye, Ng, Lydia, Zhang, Li, Lim, Byung, Hawrylycz, Michael, Gong, Hui, Gee, James, Kim, Yongsoo, Chung, Kwanghun, Yang, X, Peng, Hanchuan, Luo, Qingming, Mitra, Partha, Zador, Anthony, Zeng, Hongkui, Ascoli, Giorgio, Josh Huang, Z, Osten, Pavel, Harris, Julie, Dong, Hong-Wei