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Jeff Boyd

Jeff Boyd

Professor
Cancer Center Member

Ph.D., North Carolina State University, 1986

jboyd@cshl.edu | 516-321-2240

Faculty Profile

My research interests are in the molecular genetics, genetics, and genomics of gynecologic and breast cancers. Currently I am focused on the early natural histories of ovarian carcinoma and metastatic breast cancer, the genomics of ovarian cancer stem/progenitor cells, and the hypothesis that most breast cancers result from polygenic susceptibility.

My research interests have long been in the somatic molecular genetics, inherited genetics, and genomics of gynecologic (endometrial and ovarian) and breast cancers. Current areas of focus include elucidating the early natural history of epithelial ovarian carcinoma using combined histopathologic and molecular genetic techniques. The histogenesis of ovarian carcinoma remains very poorly understood, which is remarkable for a relatively common solid tumor type. With the recent advent of technology allowing for the interrogation of cancer “omics,” a related research goal is to perform a comprehensive genomic characterization of putative ovarian cancer stem/progenitor cells. With respect to breast cancer, I am focused on two novel hypotheses. The first is that primary breast cancers do not metastasize (linear model), but rather that primary and metastatic breast cancer lesions arise concomitantly from a small population of breast cancer stem cells (parallel model). This hypothesis is based on epidemiologic and clinical data, but awaits rigorous testing in the laboratory. Second is the hypothesis that a majority of breast cancers occur in a genetically susceptible minority of the population. This hypothesis is also based on epidemiologic and clinical data, and requires a polygenic basis for “genetic susceptibility” in this context. Finding the right laboratory and computational approach(es) to this hypothesis is a great challenge, but a tractable one. Finally, I am exploiting the advent of next-generation sequencing technology and my career-long desire to affect cancer patient care by creating a clinical molecular diagnostics program (Center for Genomic Medicine) at our clinical affiliate, the Northwell Health Cancer Institute.

See all Boyd news

Selected Publications

A parallel model for breast cancer metastasis

2018 | Breast Cancer Research and Treatment | 170(2):443-444
Boyd, J

BRCA mutation status is not associated with increased hematologic toxicity among patients undergoing platinum-based chemotherapy for ovarian cancer.

Jan 2018 | International Journal of Gynecological Cancer | 28(1):69-76
Kotsopoulos, J, Willows, K, Trat, S, Kim, R, Volenik, A, Sun, P, Narod, S, Boyd, J, May, T

Comprehensive and Integrated Genomic Characterization of Adult Soft Tissue Sarcomas

2017 | Cell | 171(4):950-965.e28
Abeshouse, A, Adebamowo, C, Adebamowo, S, Akbani, R, Akeredolu, T, Ally, A, Anderson, M, Anur, P, Appelbaum, E, Armenia, J, Auman, J, Bailey, M, Baker, L, Balasundaram, M, Balu, S, Barthel, F, Bartlett, J, Baylin, S, Behera, M, Belyaev, D, Bennett, J, Benz, C, Beroukhim, R, Birrer, M, Bocklage, T, Bodenheimer, T, Boice, L, Bootwalla, M, Bowen, J, Bowlby, R, Boyd, J, Brohl, A, Brooks, D, Byers, L, Carlsen, R, Castro, P, Chen, H, Cherniack, A, Chibon, F, Chin, L, Cho, J, Chuah, E, Chudamani, S, Cibulskis, C, Cooper, L, Cope, L, Cordes, M, Crain, D, Curley, E, Danilova, L, Dao, F, Davis, I, Davis, L, Defreitas, T, Delman, K, Demchok, J, Demetri, G, Demicco, E, Dhalla, N, Diao, L, Ding, L, DiSaia, P, Dottino, P, Doyle, L, Drill, E, Dubina, M, Eschbacher, J, Fedosenko, K, Felau, I, Ferguson, M, Frazer, S, Fronick, C, Fulidou, V, Fulton, L, Fulton, R, Gabriel, S, Gao, J, Gao, Q, Gardner, J, Gastier-Foster, J, Gay, C, Gehlenborg, N, Gerken, M, Getz, G, Godwin, A, Godwin, E, Gordienko, E, Grilley-Olson, J, Gutman, D, Gutmann, D, Hayes, D, Hegde, A, Heiman, D, Heins, Z, Helsel, C, Hepperla, A, Higgins, K, Hoadley, K, Hobensack, S, Holt, R, Hoon, D, Hornick, J, Hoyle, A, Hu, X, Huang, M, Hutter, C, Iacocca, M, Ingram, D, Ittmann, M, Iype, L, Jefferys, S, Jones, K, Jones, C, Jones, S, Kalir, T, Karlan, B, Karseladze, A, Kasaian, K, Kim, J, Kundra, R, Kuo, H, Ladanyi, M, Lai, P, Laird, P, Larsson, E, Lawrence, M, Lazar, A, Lee, S, Lee, D, Lehmann, K, Leraas, K, Lester, J, Levine, D, Li, I, Lichtenberg, T, Lin, P, Liu, J, Liu, W, Liu, E, Lolla, L, Lu, Y, Ma, Y, Madan, R, Maglinte, D, Magliocco, A, Maki, R, Mallery, D, Manikhas, G, Mardis, E, Mariamidze, A, Marra, M, Martignetti, J, Martinez, C, Mayo, M, McLellan, M, Meier, S, Meng, S, Meyerson, M, Mieczkowski, P, Miller, C, Mills, G, Moore, R, Morris, S, Mose, L, Mozgovoy, E, Mungall, A, Mungall, K, Nalisnik, M, Naresh, R, Newton, Y, Noble, M, Novak, J, Ochoa, A, Olvera, N, Owonikoko, T, Paklina, O, Parfitt, J, Parker, J, Pastore, A, Paulauskis, J, Penny, R, Pereira, E, Perou, C, Perou, A, Pihl, T, Pollock, R, Potapova, O, Radenbaugh, A, Ramalingam, S, Ramirez, N, Rathmell, W, Raut, C, Riedel, R, Reilly, C, Reynolds, S, Roach, J, Robertson, A, Roszik, J, Rubin, B, Sadeghi, S, Saksena, G, Salner, A, Sanchez-Vega, F, Sander, C, Schein, J, Schmidt, H, Schultz, N, Schumacher, S, Sekhon, H, Senbabaoglu, Y, Setdikova, G, Shelton, C, Shelton, T, Shen, R, Shi, Y, Shih, J, Shmulevich, I, Sica, G, Simons, J, Singer, S, Sipahimalani, P, Skelly, T, Socci, N, Sofia, H, Soloway, M, Spellman, P, Sun, Q, Swanson, P, Tam, A, Tan, D, Tarnuzzer, R, Thiessen, N, Thompson, E, Thorne, L, Tong, P, Torres, K, van de Rijn, M, Van Den Berg, D, Van Tine, B, Veluvolu, U, Verhaak, R, Voet, D, Voronina, O, Wan, Y, Wang, Z, Wang, J, Weinstein, J, Weisenberger, D, Wilkerson, M, Wilson, R, Wise, L, Wong, T, Wong, W, Wrangle, J, Wu, Y, Wyczalkowski, M, Yang, L, Yau, C, Yellapantula, V, Zenklusen, J, Zhang, J, Zhang, H, Zhang, H, Zmuda, E, The Cancer Genome Atlas Research, Network

A new role for ERα: Silencing via DNA methylation of basal, stem cell, and EMT genes

2017 | Molecular Cancer Research | 15(2):152-164
Ariazi, E, Taylor, J, Black, M, Nicolas, E, Slifker, M, Azzam, D, Boyd, J

The Molecular Taxonomy of Primary Prostate Cancer

2015 | Cell | 163(4):1011-1025
Abeshouse, A, Ahn, J, Akbani, R, Ally, A, Amin, S, Andry, C, Annala, M, Aprikian, A, Armenia, J, Arora, A, Auman, J, Balasundaram, M, Balu, S, Barbieri, C, Bauer, T, Benz, C, Bergeron, A, Beroukhim, R, Berrios, M, Bivol, A, Bodenheimer, T, Boice, L, Bootwalla, M, Borges Dos Reis, R, Boutros, P, Bowen, J, Bowlby, R, Boyd, J, Bradley, R, Breggia, A, Brimo, F, Bristow, C, Brooks, D, Broom, B, Bryce, A, Bubley, G, Burks, E, Butterfield, Y, Button, M, Canes, D, Carlotti, C, Carlsen, R, Carmel, M, Carroll, P, Carter, S, Cartun, R, Carver, B, Chan, J, Chang, M, Chen, Y, Cherniack, A, Chevalier, S, Chin, L, Cho, J, Chu, A, Chuah, E, Chudamani, S, Cibulskis, K, Ciriello, G, Clarke, A, Cooperberg, M, Corcoran, N, Costello, A, Cowan, J, Crain, D, Curley, E, David, K, Demchok, J, Demichelis, F, Dhalla, N, Dhir, R, Doueik, A, Drake, B, Dvinge, H, Dyakova, N, Felau, I, Ferguson, M, Frazer, S, Freedland, S, Fu, Y, Gabriel, S, Gao, J, Gardner, J, Gastier-Foster, J, Gehlenborg, N, Gerken, M, Gerstein, M, Getz, G, Godwin, A, Gopalan, A, Graefen, M, Graim, K, Gribbin, T, Guin, R, Gupta, M, Hadjipanayis, A, Haider, S, Hamel, L, Hayes, D, Heiman, D, Hess, J, Hoadley, K, Holbrook, A, Holt, R, Holway, A, Hovens, C, Hoyle, A, Huang, M, Hutter, C, Ittmann, M, Iype, L, Jefferys, S, Jones, C, Jones, S, Juhl, H, Kahles, A, Kane, C, Kasaian, K, Kerger, M, Khurana, E, Kim, J, Klein, R, Kucherlapati, R, Lacombe, L, Ladanyi, M, Lai, P, Laird, P, Lander, E, Latour, M, Lawrence, M, Lau, K, Lebien, T, Lee, D, Lee, S, Lehmann, K, Leraas, K, Leshchiner, I, Leung, R, Libertino, J, Lichtenberg, T, Lin, P, Linehan, W, Ling, S, Lippman, S, Liu, J, Liu, W, Lochovsky, L, Loda, M, Logothetis, C, Lolla, L, Longacre, T, Lu, Y, Luo, J, Ma, Y, Mahadeshwar, H, Mallery, D, Mariamidze, A, Marra, M, Mayo, M, McCall, S, McKercher, G, Meng, S, Mes-Masson, A, Merino, M, Meyerson, M, Mieczkowski, P, Mills, G, Shaw, K, Minner, S, Moinzadeh, A, Moore, R, Morris, S, Morrison, C, Mose, L, Mungall, A, Murray, B, Myers, J, Naresh, R, Nelson, J, Nelson, M, Nelson, P, Newton, Y, Noble, M, Noushmehr, H, Nykter, M, Pantazi, A, Parfenov, M, Park, P, Parker, J, Paulauskis, J, Penny, R, Perou, C, Piché, A, Pihl, T, Pinto, P, Prandi, D, Protopopov, A, Ramirez, N, Rao, A, Rathmell, W, Rätsch, G, Ren, X, Reuter, V, Reynolds, S, Rhie, S, Rieger-Christ, K, Roach, J, Robertson, A, Robinson, B, Rubin, M, Saad, F, Sadeghi, S, Saksena, G, Saller, C, Salner, A, Sanchez-Vega, F, Sander, C, Sandusky, G, Sauter, G, Sboner, A, Scardino, P, Scarlata, E, Schein, J, Schlomm, T, Schmidt, L, Schultz, N, Schumacher, S, Seidman, J, Neder, L, Seth, S, Sharp, A, Shelton, C, Shelton, T, Shen, H, Shen, R, Sherman, M, Sheth, M, Shi, Y, Shih, J, Shmulevich, I, Simko, J, Simon, R, Simons, J, Sipahimalani, P, Skelly, T, Sofia, H, Soloway, M, Song, X, Sorcini, A, Sougnez, C, Stepa, S, Stewart, C, Stewart, J, Stuart, J, Sullivan, T, Sun, C, Sun, H, Tam, A, Tan, D, Tang, J, Tarnuzzer, R, Tarvin, K, Taylor, B, Teebagy, P, Tenggara, I, Têtu, B, Tewari, A, Thiessen, N, Thompson, T, Thorne, L, Tirapelli, D, Tomlins, S, Trevisan, F, Troncoso, P, True, L, Tsourlakis, M, Tyekucheva, S, Van Allen, E, Van Den Berg, D, Veluvolu, U, Verhaak, R, Vocke, C, Voet, D, Wan, Y, Wang, Q, Wang, W, Wang, Z, Weinhold, N, Weinstein, J, Weisenberger, D, Wilkerson, M, Wise, L, Witte, J, Wu, C, Wu, J, Wu, Y, Xu, A, Yadav, S, Yang, L, Yang, L, Yau, C, Ye, H, Yena, P, Zeng, T, Zenklusen, J, Zhang, H, Zhang, J, Zhang, J, Zhang, W, Zhong, Y, Zhu, K, Zmuda, E

All Publications

Pancreatic Cancer Patient-derived Organoids Can Predict Response to Neoadjuvant Chemotherapy

1 Sep 2022 | Annals of Surgery | 276(3):450-462
Demyan, Lyudmyla, Habowski, Amber, Plenker, Dennis, King, Daniel, Standring, Oliver, Tsang, Caitlin, St Surin, Luce, Rishi, Arvind, Crawford, James, Boyd, Jeff, Pasha, Shamsher, Patel, Hardik, Galluzzo, Zachary, Metz, Christine, Gregersen, Peter, Fox, Sharon, Valente, Cristina, Abadali, Sonya, Matadial-Ragoo, Steffi, DePeralta, Danielle, Deutsch, Gary, Herman, Joseph, Talamini, Mark, Tuveson, David, Weiss, Matthew

Association of TP53 mutation status and GATA6 amplification with clinical outcome of pancreatic cancer.

20 May 2021 | Journal of Clinical Oncology | 39(15):e16224
Yang, Jung-In, Ha, Taehoon, Zhou, Edward, Tzanavaris, Chris, Devoe, Craig, Zhu, Xinhua, Boyd, Jeff

Pan-cancer analysis of whole genomes

2020 | Nature | 578(7793):82-93
Campbell, P, Getz, G, Korbel, J, Stuart, J, Jennings, J, Stein, L, Perry, M, Nahal-Bose, H, Ouellette, B, Li, C, Rheinbay, E, Nielsen, G, Sgroi, D, Wu, C, Faquin, W, Deshpande, V, Boutros, P, Lazar, A, Hoadley, K, Louis, D, Dursi, L, Yung, C, Bailey, M, Saksena, G, Raine, K, Buchhalter, I, Kleinheinz, K, Schlesner, M, Zhang, J, Wang, W, Wheeler, D, Ding, L, Simpson, J, O’Connor, B, Yakneen, S, Ellrott, K, Miyoshi, N, Butler, A, Royo, R, Shorser, S, Vazquez, M, Rausch, T, Tiao, G, Waszak, S, Rodriguez-Martin, B, Shringarpure, S, Wu, D, Demidov, G, Delaneau, O, Hayashi, S, Imoto, S, Habermann, N, Segre, A, Garrison, E, Cafferkey, A, Alvarez, E, Heredia-Genestar, J, Muyas, F, Drechsel, O, Bruzos, A, Temes, J, Zamora, J, Baez-Ortega, A, Kim, H, Mashl, R, Ye, K, DiBiase, A, Huang, K, Letunic, I, McLellan, M, Newhouse, S, Shmaya, T, Kumar, S, Wedge, D, Wright, M, Yellapantula, V, Gerstein, M, Khurana, E, Marques-Bonet, T, Navarro, A, Bustamante, C, Siebert, R, Nakagawa, H, Easton, D, Ossowski, S, Tubio, J, De La Vega, F, Estivill, X, Yuen, D, Mihaiescu, G, Omberg, L, Ferretti, V, Sabarinathan, R, Pich, O, Gonzalez-Perez, A, Taylor-Weiner, A, Fittall, M, Demeulemeester, J, Tarabichi, M, Roberts, N, Van Loo, P, Cortés-Ciriano, I, Urban, L, Park, P, Zhu, B, Pitkänen, E, Li, Y, Saini, N, Klimczak, L, Weischenfeldt, J, Sidiropoulos, N, Alexandrov, L, Rabionet, R, Escaramis, G, Bosio, M, Holik, A, Susak, H, Prasad, A, Erkek, S, Calabrese, C, Raeder, B, Harrington, E, Mayes, S, Turner, D, Juul, S, Roberts, S, Song, L, Koster, R, Mirabello, L, Hua, X, Tanskanen, T, Tojo, M, Chen, J, Aaltonen, L, Rätsch, G, Schwarz, R, Butte, A, Brazma, A, Chanock, S, Chatterjee, N, Stegle, O, Harismendy, O, Bova, G, Gordenin, D, Haan, D, Sieverling, L, Feuerbach, L, Chalmers, D, Joly, Y, Knoppers, B, Molnár-Gábor, F, Phillips, M, Thorogood, A, Townend, D, Goldman, M, Fonseca, N, Xiang, Q, Craft, B, Piñeiro-Yáñez, E, Muñoz, A, Petryszak, R, Füllgrabe, A, Al-Shahrour, F, Keays, M, Haussler, D, Weinstein, J, Huber, W, Valencia, A, Papatheodorou, I, Zhu, J, Fan, Y, Torrents, D, Bieg, M, Chen, K, Chong, Z, Cibulskis, K, Eils, R, Fulton, R, Gelpi, J, Gonzalez, S, Gut, I, Hach, F, Heinold, M, Hu, T, Huang, V, Hutter, B, Jäger, N, Jung, J, Kumar, Y, Lalansingh, C, Leshchiner, I, Livitz, D, Ma, E, Maruvka, Y, Milovanovic, A, Nielsen, M, Paramasivam, N, Pedersen, J, Puiggròs, M, Sahinalp, S, Sarrafi, I, Stewart, C, Stobbe, M, Wala, J, Wang, J, Wendl, M, Werner, J, Wu, Z, Xue, H, Yamaguchi, T, Yellapantula, V, Davis-Dusenbery, B, Grossman, R, Kim, Y, Heinold, M, Hinton, J, Jones, D, Menzies, A, Stebbings, L, Hess, J, Rosenberg, M, Dunford, A, Gupta, M, Imielinski, M, Meyerson, M, Beroukhim, R, Reimand, J, Dhingra, P, Favero, F, Dentro, S, Wintersinger, J, Rudneva, V, Park, J, Hong, E, Heo, S, Kahles, A, Lehmann, K, Soulette, C, Shiraishi, Y, Liu, F, He, Y, Demircioğlu, D, Davidson, N, Greger, L, Li, S, Liu, D, Stark, S, Zhang, F, Amin, S, Bailey, P, Chateigner, A, Frenkel-Morgenstern, M, Hou, Y, Huska, M, Kilpinen, H, Lamaze, F, Li, C, Li, X, Li, X, Liu, X, Marin, M, Markowski, J, Nandi, T, Ojesina, A, Pan-Hammarström, Q, Park, P, Pedamallu, C, Su, H, Tan, P, Teh, B, Wang, J, Xiong, H, Ye, C, Yung, C, Zhang, X, Zheng, L, Zhu, S, Awadalla, P, Creighton, C, Wu, K, Yang, H, Göke, J, Zhang, Z, Brooks, A, Fittall, M, Martincorena, I, Rubio-Perez, C, Juul, M, Schumacher, S, Shapira, O, Tamborero, D, Mularoni, L, Hornshøj, H, Deu-Pons, J, Muiños, F, Bertl, J, Guo, Q, Gonzalez-Perez, A, Xiang, Q, Bazant, W, Barrera, E, Al-Sedairy, S, Aretz, A, Bell, C, Betancourt, M, Buchholz, C, Calvo, F, Chomienne, C, Dunn, M, Edmonds, S, Green, E, Gupta, S, Hutter, C, Jegalian, K, Jones, N, Lu, Y, Nakagama, H, Nettekoven, G, Planko, L, Scott, D, Shibata, T, Shimizu, K, Stratton, M, Yugawa, T, Tortora, G, VijayRaghavan, K, Zenklusen, J, Townend, D, Knoppers, B, Aminou, B, Bartolome, J, Boroevich, K, Boyce, R, Buchanan, A, Byrne, N, Chen, Z, Cho, S, Choi, W, Clapham, P, Dow, M, Dursi, L, Eils, J, Farcas, C, Fayzullaev, N, Flicek, P, Heath, A, Hofmann, O, Hong, J, Hudson, T, Hübschmann, D, Ivkovic, S, Jeon, S, Jiao, W, Kabbe, R, Kahles, A, Kerssemakers, J, Kim, H, Kim, J, Koscher, M, Koures, A, Kovacevic, M, Lawerenz, C, Liu, J, Mijalkovic, S, Mijalkovic-Lazic, A, Miyano, S, Nastic, M, Nicholson, J, Ocana, D, Ohi, K, Ohno-Machado, L, Pihl, T, Prinz, M, Radovic, P, Short, C, Sofia, H, Spring, J, Struck, A, Tijanic, N, Vicente, D, Wang, Z, Williams, A, Woo, Y, Wright, A, Yang, L, Hamilton, M, Johnson, T, Kahraman, A, Kellis, M, Polak, P, Sallari, R, Sinnott-Armstrong, N, von Mering, C, Beltran, S, Gerhard, D, Gut, M, Trotta, J, Whalley, J, Niu, B, Espiritu, S, Gao, S, Huang, Y, Lalansingh, C, Teague, J, Wendl, M, Abascal, F, Bader, G, Bandopadhayay, P, Barenboim, J, Brunak, S, Carlevaro-Fita, J, Chakravarty, D, Chan, C, Choi, J, Diamanti, K, Fink, J, Frigola, J, Gambacorti-Passerini, C, Garsed, D, Haradhvala, N, Harmanci, A, Helmy, M, Herrmann, C, Hobolth, A, Hodzic, E, Hong, C, Isaev, K, Izarzugaza, J, Johnson, R, Juul, R, Kim, J, Kim, J, Jan, Komorowski, Lanzós, A, Larsson, E, Lee, D, Li, S, Li, X, Lin, Z, Liu, E, Lochovsky, L, Lou, S, Madsen, T, Marchal, K, Martinez-Fundichely, A, McGillivray, P, Meyerson, W, Paczkowska, M, Park, K, Park, K, Pons, T, Pulido-Tamayo, S, Reyes-Salazar, I, Reyna, M, Rubin, M, Salichos, L, Sander, C, Schumacher, S, Shackleton, M, Shen, C, Shrestha, R, Shuai, S, Tsunoda, T, Umer, H, Uusküla-Reimand, L, Verbeke, L, Wadelius, C, Wadi, L, Warrell, J, Wu, G, Yu, J, Zhang, J, Zhang, X, Zhang, Y, Zhao, Z, Zou, L, Lawrence, M, Raphael, B, Bailey, P, Craft, D, Goldman, M, Aburatani, H, Binder, H, Dinh, H, Heath, S, Hoffmann, S, Imbusch, C, Kretzmer, H, Laird, P, Martin-Subero, J, Nagae, G, Shen, H, Wang, Q, Weichenhan, D, Zhou, W, Berman, B, Brors, B, Plass, C, Akdemir, K, Bowtell, D, Burns, K, Busanovich, J, Chan, K, Dueso-Barroso, A, Edwards, P, Etemadmoghadam, D, Haber, J, Jones, D, Ju, Y, Kazanov, M, Koh, Y, Kumar, K, Lee, E, Lee, J, Lynch, A, Macintyre, G, Markowetz, F, Navarro, F, Pearson, J, Rippe, K, Scully, R, Villasante, I, Waddell, N, Yang, L, Yao, X, Yoon, S, Zhang, C, Bergstrom, E, Boot, A, Covington, K, Fujimoto, A, Huang, M, Islam, S, McPherson, J, Morganella, S, Mustonen, V, Ng, A, Prokopec, S, Vázquez-García, I, Wu, Y, Yousif, F, Yu, W, Rozen, S, Rudneva, V, Shringarpure, S, Turner, D, Xia, T, Atwal, G, Chang, D, Cooke, S, Faltas, B, Haider, S, Kaiser, V, Karlić, R, Kato, M, Kübler, K, Margolin, A, Martin, S, Nik-Zainal, S, P’ng, C, Semple, C, Smith, J, Sun, R, Thai, K, Wright, D, Yuan, K, Biankin, A, Garraway, L, Grimmond, S, Adams, D, Anur, P, Cao, S, Christie, E, Cmero, M, Cun, Y, Dawson, K, Dentro, S, Deshwar, A, Donmez, N, Drews, R, Gerstung, M, Ha, G, Haase, K, Jerman, L, Ji, Y, Jolly, C, Lee, J, Lee-Six, H, Malikic, S, Mitchell, T, Morris, Q, Oesper, L, Peifer, M, Peto, M, Rosebrock, D, Rubanova, Y, Salcedo, A, Sengupta, S, Shi, R, Shin, S, Spiro, O, Vembu, S, Wintersinger, J, Yang, T, Yu, K, Zhu, H, Spellman, P, Weinstein, J, Chen, Y, Fujita, M, Han, L, Hasegawa, T, Komura, M, Li, J, Mizuno, S, Shimizu, E, Wang, Y, Xu, Y, Yamaguchi, R, Yang, F, Yang, Y, Yoon, C, Yuan, Y, Liang, H, Alawi, M, Borozan, I, Brewer, D, Cooper, C, Desai, N, Grundhoff, A, Iskar, M, Su, X, Zapatka, M, Lichter, P, Alsop, K, Bruxner, T, Christ, A, Cordner, S, Cowin, P, Drapkin, R, Fereday, S, George, J, Hamilton, A, Holmes, O, Hung, J, Kassahn, K, Kazakoff, S, Kennedy, C, Leonard, C, Mileshkin, L, Miller, D, Arnau, G, Mitchell, C, Newell, F, Nones, K, Patch, A, Quinn, M, Taylor, D, Thorne, H, Traficante, N, Vedururu, R, Waddell, N, Waring, P, Wood, S, Xu, Q, deFazio, A, Anderson, M, Antonello, D, Barbour, A, Bassi, C, Bersani, S, Cataldo, I, Chantrill, L, Chiew, Y, Chou, A, Cingarlini, S, Cloonan, N, Corbo, V, Davi, M, Duthie, F, Gill, A, Graham, J, Harliwong, I, Jamieson, N, Johns, A, Kench, J, Landoni, L, Lawlor, R, Mafficini, A, Merrett, N, Miotto, M, Musgrove, E, Nagrial, A, Oien, K, Pajic, M, Pinese, M, Robertson, A, Rooman, I, Rusev, B, Samra, J, Scardoni, M, Scarlett, C, Scarpa, A, Sereni, E, Sikora, K, Simbolo, M, Taschuk, M, Toon, C, Vicentini, C, Wu, J, Zeps, N, Behren, A, Burke, H, Cebon, J, Dagg, R, De Paoli-Iseppi, R, Dutton-Regester, K, Field, M, Fitzgerald, A, Hersey, P, Jakrot, V, Johansson, P, Kakavand, H, Kefford, R, Lau, L, Long, G, Pickett, H, Pritchard, A, Pupo, G, Saw, R, Schramm, S, Shang, C, Shang, P, Spillane, A, Stretch, J, Tembe, V, Thompson, J, Vilain, R, Wilmott, J, Yang, J, Hayward, N, Mann, G, Scolyer, R, Bartlett, J, Bavi, P, Chadwick, D, Chan-Seng-Yue, M, Cleary, S, Connor, A, Czajka, K, Denroche, R, Dhani, N, Eagles, J, Gallinger, S, Grant, R, Hedley, D, Hollingsworth, M, Jang, G, Johns, J, Kalimuthu, S, Liang, S, Lungu, I, Luo, X, Mbabaali, F, McPherson, T, Miller, J, Moore, M, Notta, F, Pasternack, D, Petersen, G, Roehrl, M, Sam, M, Selander, I, Serra, S, Shahabi, S, Thayer, S, Timms, L, Wilson, G, Wilson, J, Wouters, B, McPherson, J, Beck, T, Bhandari, V, Collins, C, Fleshner, N, Fox, N, Fraser, M, Heisler, L, Lalonde, E, Livingstone, J, Meng, A, Sabelnykova, V, Shiah, Y, Van der Kwast, T, Bristow, R, Ding, S, Fan, D, Li, L, Nie, Y, Xiao, X, Xing, R, Yang, S, Yu, Y, Zhou, Y, Banks, R, Bourque, G, Brennan, P, Letourneau, L, Riazalhosseini, Y, Scelo, G, Vasudev, N, Viksna, J, Lathrop, M, Tost, J, Ahn, S, Aparicio, S, Arnould, L, Aure, M, Bhosle, S, Birney, E, Borg, A, Boyault, S, Brinkman, A, Brock, J, Broeks, A, Børresen-Dale, A, Caldas, C, Chin, S, Davies, H, Desmedt, C, Dirix, L, Dronov, S, Ehinger, A, Eyfjord, J, Fatima, A, Foekens, J, Futreal, P, Garred, Ø, Giri, D, Glodzik, D, Grabau, D, Hilmarsdottir, H, Hooijer, G, Jacquemier, J, Jang, S, Jonasson, J, Jonkers, J, Kim, H, King, T, Knappskog, S, Kong, G, Krishnamurthy, S, Lakhani, S, Langerød, A, Larsimont, D, Lee, H, Lee, J, Lee, M, Lingjærde, O, MacGrogan, G, Martens, J, O’Meara, S, Pauporté, I, Pinder, S, Pivot, X, Provenzano, E, Purdie, C, Ramakrishna, M, Ramakrishnan, K, Reis-Filho, J, Richardson, A, Ringnér, M, Rodriguez, J, Rodríguez-González, F, Romieu, G, Salgado, R, Sauer, T, Shepherd, R, Sieuwerts, A, Simpson, P, Smid, M, Sotiriou, C, Span, P, Stefánsson, Ó, Stenhouse, A, Stunnenberg, H, Sweep, F, Tan, B, Thomas, G, Thompson, A, Tommasi, S, Treilleux, I, Tutt, A, Ueno, N, Van Laere, S, Van den Eynden, G, Vermeulen, P, Viari, A, Vincent-Salomon, A, Wong, B, Yates, L, Zou, X, van Deurzen, C, van de Vijver, M, van’t Veer, L, Ammerpohl, O, Aukema, S, Bergmann, A, Bernhart, S, Borkhardt, A, Borst, C, Burkhardt, B, Claviez, A, Goebler, M, Haake, A, Haas, S, Hansmann, M, Hoell, J, Hummel, M, Karsch, D, Klapper, W, Kneba, M, Kreuz, M, Kube, D, Küppers, R, Lenze, D, Loeffler, M, López, C, Mantovani-Löffler, L, Möller, P, Ott, G, Radlwimmer, B, Richter, J, Rohde, M, Rosenstiel, P, Rosenwald, A, Schilhabel, M, Schreiber, S, Stadler, P, Staib, P, Stilgenbauer, S, Sungalee, S, Szczepanowski, M, Toprak, U, Trümper, L, Wagener, R, Zenz, T, Hovestadt, V, von Kalle, C, Kool, M, Korshunov, A, Landgraf, P, Lehrach, H, Northcott, P, Pfister, S, Reifenberger, G, Warnatz, H, Wolf, S, Yaspo, M, Assenov, Y, Gerhauser, C, Minner, S, Schlomm, T, Simon, R, Sauter, G, Sültmann, H, Biswas, N, Maitra, A, Majumder, P, Sarin, R, Barbi, S, Bonizzato, G, Cantù, C, Dei Tos, A, Fassan, M, Grimaldi, S, Luchini, C, Malleo, G, Marchegiani, G, Milella, M, Paiella, S, Pea, A, Pederzoli, P, Ruzzenente, A, Salvia, R, Sperandio, N, Arai, Y, Hama, N, Hiraoka, N, Hosoda, F, Nakamura, H, Ojima, H, Okusaka, T, Totoki, Y, Urushidate, T, Fukayama, M, Ishikawa, S, Katai, H, Katoh, H, Komura, D, Rokutan, H, Saito-Adachi, M, Suzuki, A, Taniguchi, H, Tatsuno, K, Ushiku, T, Yachida, S, Yamamoto, S, Aikata, H, Arihiro, K, Ariizumi, S, Chayama, K, Furuta, M, Gotoh, K, Hayami, S, Hirano, S, Kawakami, Y, Maejima, K, Nakamura, T, Nakano, K, Ohdan, H, Sasaki-Oku, A, Tanaka, H, Ueno, M, Yamamoto, M, Yamaue, H, Choo, S, Cutcutache, I, Khuntikeo, N, Ong, C, Pairojkul, C, Popescu, I, Ahn, K, Aymerich, M, Lopez-Guillermo, A, López-Otín, C, Puente, X, Campo, E, Amary, F, Baumhoer, D, Behjati, S, Bjerkehagen, B, Futreal, P, Myklebost, O, Pillay, N, Tarpey, P, Tirabosco, R, Zaikova, O, Flanagan, A, Boultwood, J, Bowen, D, Cazzola, M, Green, A, Hellstrom-Lindberg, E, Malcovati, L, Nangalia, J, Papaemmanuil, E, Vyas, P, Ang, Y, Barr, H, Beardsmore, D, Eldridge, M, Gossage, J, Grehan, N, Hanna, G, Hayes, S, Hupp, T, Khoo, D, Lagergren, J, Lovat, L, MacRae, S, O’Donovan, M, O’Neill, J, Parsons, S, Preston, S, Puig, S, Roques, T, Sanders, G, Sothi, S, Tavaré, S, Tucker, O, Turkington, R, Underwood, T, Welch, I, Fitzgerald, R, Berney, D, De Bono, J, Cahill, D, Camacho, N, Dennis, N, Dudderidge, T, Edwards, S, Fisher, C, Foster, C, Ghori, M, Gill, P, Gnanapragasam, V, Gundem, G, Hamdy, F, Hawkins, S, Hazell, S, Howat, W, Isaacs, W, Karaszi, K, Kay, J, Khoo, V, Kote-Jarai, Z, Kremeyer, B, Kumar, P, Lambert, A, Leongamornlert, D, Livni, N, Lu, Y, Luxton, H, Marsden, L, Massie, C, Matthews, L, Mayer, E, McDermott, U, Merson, S, Neal, D, Ng, A, Nicol, D, Ogden, C, Rowe, E, Shah, N, Thomas, S, Thompson, A, Verrill, C, Visakorpi, T, Warren, A, Whitaker, H, Zhang, H, van As, N, Eeles, R, Abeshouse, A, Agrawal, N, Akbani, R, Al-Ahmadie, H, Albert, M, Aldape, K, Ally, A, Appelbaum, E, Armenia, J, Asa, S, Auman, J, Balasundaram, M, Balu, S, Barnholtz-Sloan, J, Bathe, O, Baylin, S, Benz, C, Berchuck, A, Berrios, M, Bigner, D, Birrer, M, Bodenheimer, T, Boice, L, Bootwalla, M, Bosenberg, M, Bowlby, R, Boyd, J, Broaddus, R, Brock, M, Brooks, D, Bullman, S, Caesar-Johnson, S, Carey, T, Carlsen, R, Cerfolio, R, Chandan, V, Chen, H, Cherniack, A, Chien, J, Cho, J, Chuah, E, Cibulskis, C, Cope, L, Cordes, M, Curley, E, Czerniak, B, Danilova, L, Davis, I, Defreitas, T, Demchok, J, Dhalla, N, Dhir, R, Doddapaneni, H, El-Naggar, A, Felau, I, Ferguson, M, Finocchiaro, G, Fong, K, Frazer, S, Friedman, W, Fronick, C, Fulton, L, Gabriel, S, Gao, J, Gehlenborg, N, Gershenwald, J, Ghossein, R, Giama, N, Gibbs, R, Gomez, C, Govindan, R, Hayes, D, Hegde, A, Heiman, D, Heins, Z, Hepperla, A, Holbrook, A, Holt, R, Hoyle, A, Hruban, R, Hu, J, Huang, M, Huntsman, D, Huse, J, Iacobuzio-Donahue, C, Ittmann, M, Jayaseelan, J, Jefferys, S, Jones, C, Jones, S, Juhl, H, Kang, K, Karlan, B, Kasaian, K, Kebebew, E, Kim, H, Korchina, V, Kundra, R, Lai, P, Lander, E, Le, X, Lee, D, Levine, D, Lewis, L, Ley, T, Li, H, Lin, P, Linehan, W, Liu, F, Lu, Y, Lype, L, Ma, Y, Maglinte, D, Mardis, E, Marks, J, Marra, M, Matthew, T, Mayo, M, McCune, K, Meier, S, Meng, S, Mieczkowski, P, Mikkelsen, T, Miller, C, Mills, G, Moore, R, Morrison, C, Mose, L, Moser, C, Mungall, A, Mungall, K, Mutch, D, Muzny, D, Myers, J, Newton, Y, Noble, M, O’Donnell, P, O’Neill, B, Ochoa, A, Park, J, Parker, J, Pass, H, Pastore, A, Pennell, N, Perou, C, Petrelli, N, Potapova, O, Rader, J, Ramalingam, S, Rathmell, W, Reuter, V, Reynolds, S, Ringel, M, Roach, J, Roberts, L, Robertson, A, Sadeghi, S, Saller, C, Sanchez-Vega, F, Schadendorf, D, Schein, J, Schmidt, H, Schultz, N, Seethala, R, Senbabaoglu, Y, Shelton, T, Shi, Y, Shih, J, Shmulevich, I, Shriver, C, Signoretti, S, Simons, J, Singer, S, Sipahimalani, P, Skelly, T, Smith-McCune, K, Socci, N, Soloway, M, Sood, A, Tam, A, Tan, D, Tarnuzzer, R, Thiessen, N, Thompson, R, Thorne, L, Tsao, M, Umbricht, C, Van Den Berg, D, Van Meir, E, Veluvolu, U, Voet, D, Wang, L, Weinberger, P, Weisenberger, D, Wigle, D, Wilkerson, M, Wilson, R, Winterhoff, B, Wiznerowicz, M, Wong, T, Wong, W, Xi, L, Yau, C, Zhang, H, Zhang, H, Zhang, J, The, Icgc

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