Cold Spring Harbor, NY — Pancreatic ductal adenocarcinoma (PDAC) is the fourth leading cause of cancer-related deaths in the world. Mostly chemoresistant, PDAC so far has no effective treatment. Understanding the connective tissue, called stroma, that surrounds, nurtures, and even protects PDAC tumors, is key to developing effective therapeutics.
“PDAC patients are diagnosed really late, so we don’t know they’re sick until the very end stages,” said Ela Elyada, a postdoctoral fellow in Dr. David Tuveson’s lab at Cold Spring Harbor Laboratory (CSHL). “We can’t diagnose patients early enough because we don’t have tools, and they don’t respond to drugs. One barrier to the drugs is the fibroblasts in the stroma.”
PDAC is characterized by an abundance of non-malignant stromal cells, and fibroblasts are one of the most common types of stromal cells. “We have a lot of fibroblasts in pancreatic cancer, unlike other cancers which are mostly cancer cells,” Elyada said. These cancer-associated fibroblasts (CAFs) can help cancer cells proliferate, survive and evade detection by the immune system.
The insidious role CAFs seem to play in protecting cancer cells labels them as bad, but completely obliterating CAFs in mice also worsened their cancers. Elyada wanted to investigate the nature of CAFs: are they good or bad? To crack the case, she, Associate Professor Paul Robson at the Jackson Laboratory, and colleagues used single-cell RNA sequencing to classify the fibroblasts into three distinct sub-populations, identifying specific functions and characteristics unique to each. This includes two previously identified types of CAFs, myofibroblastic CAFs (myCAFs) and inflammatory CAFs (iCAFs), and also a new type of CAF called antigen-presenting CAFs (apCAFs). The apCAFs were present in both mice and human PDAC. Their findings are published in the journal Cancer Discovery.
While newly identified apCAFs had the properties of a fibroblast, Elyada and her team found that they were different from the other fibroblast sub-populations. They expressed MHC class II genes, which are usually only expressed by specialized immune cells. Cells with MHC class II molecules on the surface can present antigens, or foreign peptides from viruses and bacteria, to helper T-cells. Detecting the antigen, the T-cell activates and recruits cytotoxic T-cells and other immune elements to attack and eliminate the invader. But apCAFs present in pancreatic tumors lack other components that activate T-cells. Elyada and her team hypothesize that this may result in incompletely activated T-cells that are unable to properly eliminate the cancer cells.
“We showed that apCAFs have specific capabilities of interacting with T-cells in a way that other CAFs don’t,” said Elyada. The research team now wants to know how the apCAFs are interacting with T-cells and the immune system. “If we can show that the apCAFs are somehow inhibiting the activity of T-cells, we can come up with therapies that specifically target that type of CAFs,” Elyada proposed. “We can also combine it with other, complementary immune therapies to make them more effective.”
This research was funded by the Lustgarten Foundation, Cold Spring Harbor Laboratory Association, the Thompson Foundation, the Simons Foundation, the National Institutes of Health, Human Frontiers Science Program, EMBO and NCI.
Elyada, E. et. al, “Cross-species single-cell analysis of pancreatic ductal adenocarcinoma reveals antigen-presenting cancer-associated fibroblasts” was published in Cancer Discovery on June 13, 2019.
About Cold Spring Harbor Laboratory
Founded in 1890, Cold Spring Harbor Laboratory has shaped contemporary biomedical research and education with programs in cancer, neuroscience, plant biology and quantitative biology. Home to eight Nobel Prize winners, the private, not-for-profit Laboratory employs 1,100 people including 600 scientists, students and technicians. The Meetings & Courses Program annually hosts more than 12,000 scientists. The Laboratory’s education arm also includes an academic publishing house, a graduate school and the DNA Learning Center with programs for middle and high school students and teachers. For more information, visit www.cshl.edu
Roy J. Zuckerberg Professor of Cancer Research
M.D., Ph.D., Johns Hopkins University, 1994